J3_11FV_006

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAG*CGCAG*CGAUAAG

Length

16 nucleotides

Bulged bases

11FV|1|C|U|865, 11FV|1|C|A|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11FV_006 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.2009

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

11FV|1|C|C|820
11FV|1|C|U|821
11FV|1|C|A|822
11FV|1|C|G|823
*
11FV|1|C|C|851
11FV|1|C|G|852
11FV|1|C|C|853
11FV|1|C|A|854
11FV|1|C|G|855
*
11FV|1|C|C|862
11FV|1|C|G|863
11FV|1|C|A|864
11FV|1|C|U|865
11FV|1|C|A|866
11FV|1|C|A|867
11FV|1|C|G|868

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS21

Chain D

Small ribosomal subunit protein uS2

Chain o

Small ribosomal subunit protein uS8