J3_11FV_030

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

11FV|1|I|A|2518, 11FV|1|I|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11FV_030 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.2032

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

11FV|1|I|C|2517
11FV|1|I|A|2518
11FV|1|I|U|2519
11FV|1|I|C|2520
*
11FV|1|I|G|2545
11FV|1|I|U|2546
11FV|1|I|A|2547
*
11FV|1|I|U|2561
11FV|1|I|U|2562
11FV|1|I|U|2563
11FV|1|I|A|2564
11FV|1|I|A|2565
11FV|1|I|A|2566
11FV|1|I|G|2567

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL14