J3_11GG_005
3D structure
- PDB id
- 11GG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 11GG|1|C|U|717
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11GG_005 not in the Motif Atlas
- Homologous match to J3_6CZR_017
- Geometric discrepancy: 0.2438
- The information below is about J3_6CZR_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.3
- Basepair signature
- cWW-F-cWW-F-F-tWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
11GG|1|C|U|666
11GG|1|C|G|667
*
11GG|1|C|C|711
11GG|1|C|A|712
11GG|1|C|C|713
11GG|1|C|C|714
11GG|1|C|A|715
11GG|1|C|G|716
11GG|1|C|U|717
11GG|1|C|G|718
11GG|1|C|G|719
*
11GG|1|C|C|726
11GG|1|C|G|727
11GG|1|C|A|728
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain 3
- Small ribosomal subunit protein bS21
- Chain H
- Small ribosomal subunit protein bS6
- Chain K
- 50S ribosomal protein L2
- Chain r
- 30S ribosomal protein S11
- Chain w
- Small ribosomal subunit protein uS15
- Chain z
- Small ribosomal subunit protein bS18
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