J3_11GG_007

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_007 not in the Motif Atlas

Homologous match to J3_6CZR_061

Geometric discrepancy: 0.114

The information below is about J3_6CZR_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.3

Basepair signature

cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

11GG|1|C|C|930
11GG|1|C|A|931
11GG|1|C|A|932
11GG|1|C|G|933
*
11GG|1|C|C|1338
11GG|1|C|U|1339
11GG|1|C|A|1340
11GG|1|C|G|1341
11GG|1|C|U|1342
11GG|1|C|A|1343
11GG|1|C|A|1344
*
11GG|1|C|U|1366
11GG|1|C|G|1367
11GG|1|C|A|1368
11GG|1|C|A|1369
11GG|1|C|U|1370
11GG|1|C|A|1371
11GG|1|C|C|1372
11GG|1|C|G|1373

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS7

Chain p

Small ribosomal subunit protein uS9