J3_11GG_014

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UG*UGUU*GUAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_014 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1988

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

11GG|1|C|U|1067
11GG|1|C|G|1068
*
11GG|1|C|U|1077
11GG|1|C|G|1078
11GG|1|C|U|1079
11GG|1|C|U|1080
*
11GG|1|C|G|1093
11GG|1|C|U|1094
11GG|1|C|A|1095
11GG|1|C|A|1096

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS21

Chain D

Small ribosomal subunit protein uS2

Chain G

Small ribosomal subunit protein uS5