J3_11GG_016

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

11GG|1|C|U|1234, 11GG|1|C|C|1296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_016 not in the Motif Atlas

Homologous match to J3_6CZR_026

Geometric discrepancy: 0.185

The information below is about J3_6CZR_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.5

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

11GG|1|C|C|1231
11GG|1|C|A|1232
11GG|1|C|A|1233
11GG|1|C|U|1234
11GG|1|C|G|1235
*
11GG|1|C|C|1290
11GG|1|C|G|1291
11GG|1|C|U|1292
11GG|1|C|A|1293
11GG|1|C|G|1294
11GG|1|C|U|1295
11GG|1|C|C|1296
11GG|1|C|C|1297
*
11GG|1|C|G|1328
11GG|1|C|U|1329
11GG|1|C|C|1330
11GG|1|C|G|1331

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS7

Chain u

Small ribosomal subunit protein uS13