J3_11GG_017

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_017 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0744

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

11GG|1|I|G|30
11GG|1|I|C|31
*
11GG|1|I|G|474
11GG|1|I|C|475
11GG|1|I|G|476
11GG|1|I|A|477
11GG|1|I|A|478
11GG|1|I|A|479
11GG|1|I|A|480
11GG|1|I|G|481
*
11GG|1|I|C|509
11GG|1|I|C|510

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L20

Chain c

50S ribosomal protein L24