J3_11GG_021

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

11GG|1|I|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_021 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0634

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

11GG|1|I|G|297
11GG|1|I|G|298
11GG|1|I|A|299
11GG|1|I|A|300
11GG|1|I|G|301
*
11GG|1|I|C|316
11GG|1|I|G|317
11GG|1|I|C|318
11GG|1|I|G|319
11GG|1|I|A|320
11GG|1|I|U|321
11GG|1|I|A|322
11GG|1|I|C|323
11GG|1|I|A|324
11GG|1|I|G|325
*
11GG|1|I|C|337
11GG|1|I|G|338
11GG|1|I|U|339
11GG|1|I|A|340
11GG|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

Large ribosomal subunit protein uL4

Chain c

50S ribosomal protein L24