J3_11GG_025

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

11GG|1|I|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11GG_025 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1865

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

11GG|1|I|C|1298
11GG|1|I|G|1299
11GG|1|I|G|1300
11GG|1|I|A|1301
11GG|1|I|A|1302
11GG|1|I|G|1303
*
11GG|1|I|C|1625
11GG|1|I|A|1626
11GG|1|I|G|1627
*
11GG|1|I|C|1639
11GG|1|I|A|1640
11GG|1|I|A|1641
11GG|1|I|G|1642

Current chains

Chain I

23S ribosomal RNA

Nearby chains