J3_11HE_020
3D structure
- PDB id
- 11HE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV closed
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 11HE|1|28|C|4116, 11HE|1|28|U|4117, 11HE|1|28|U|4118, 11HE|1|28|C|4119, 11HE|1|28|U|4120, 11HE|1|28|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11HE_020 not in the Motif Atlas
- Homologous match to J3_9PN5_019
- Geometric discrepancy: 0.2098
- The information below is about J3_9PN5_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60469.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
11HE|1|28|G|4091
11HE|1|28|G|4092
11HE|1|28|G|4093
11HE|1|28|G|4094
*
11HE|1|28|C|4114
11HE|1|28|G|4115
11HE|1|28|C|4116
11HE|1|28|U|4117
11HE|1|28|U|4118
11HE|1|28|C|4119
11HE|1|28|U|4120
11HE|1|28|G|4121
11HE|1|28|G|4122
11HE|1|28|C|4123
11HE|1|28|G|4124
11HE|1|28|C|4125
11HE|1|28|C|4126
11HE|1|28|A|4127
11HE|1|28|A|4128
11HE|1|28|G|4129
*
11HE|1|28|C|4155
11HE|1|28|G|4156
11HE|1|28|A|4157
11HE|1|28|C|4158
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 27
- 60S ribosomal protein L27
- Chain 30
- 60S ribosomal protein L30
- Chain 34
- 60S ribosomal protein L34
- Chain L8
- 60S ribosomal protein L8
- Chain aa
- Large ribosomal subunit protein eL8
- Chain ff
- 60S ribosomal protein L37a
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