J3_11HV_015

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

11HV|1|28|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HV_015 not in the Motif Atlas

Homologous match to J3_8GLP_006

Geometric discrepancy: 0.1939

The information below is about J3_8GLP_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HV|1|28|A|2551
11HV|1|28|G|2552
11HV|1|28|A|2553
11HV|1|28|U|2554
11HV|1|28|G|2555
*
11HV|1|28|C|2572
11HV|1|28|A|2573
11HV|1|28|G|2574
11HV|1|28|U|2575
*
11HV|1|28|A|2757
11HV|1|28|G|2758
11HV|1|28|G|2759
11HV|1|28|G|2760
11HV|1|28|U|2761
11HV|1|28|G|2762
11HV|1|28|U|2763
11HV|1|28|A|2764
11HV|1|28|A|2765
11HV|1|28|A|2766
11HV|1|28|U|2767

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 27

60S ribosomal protein L27