J3_11HV_021

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

11HV|1|28|A|4280, 11HV|1|28|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HV_021 not in the Motif Atlas

Homologous match to J3_9AXU_022

Geometric discrepancy: 0.0622

The information below is about J3_9AXU_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.3

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

11

Unit IDs

11HV|1|28|C|4241
11HV|1|28|U|4242
11HV|1|28|C|4243
*
11HV|1|28|G|4267
11HV|1|28|A|4268
11HV|1|28|G|4269
*
11HV|1|28|C|4278
11HV|1|28|A|4279
11HV|1|28|A|4280
11HV|1|28|A|4281
11HV|1|28|A|4282
11HV|1|28|G|4283

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 11

60S ribosomal protein L11

Chain 21

60S ribosomal protein L21

Chain 5

5S ribosomal RNA; 5S rRNA

Chain L5

60S ribosomal protein L5