J3_11IQ_002

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

11IQ|1|18|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11IQ_002 not in the Motif Atlas

Homologous match to J3_9PN5_028

Geometric discrepancy: 0.0753

The information below is about J3_9PN5_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.3

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

11IQ|1|18|A|40
11IQ|1|18|G|41
11IQ|1|18|A|42
11IQ|1|18|U|43
11IQ|1|18|U|44
11IQ|1|18|A|45
11IQ|1|18|A|46
11IQ|1|18|G|47
*
11IQ|1|18|C|479
11IQ|1|18|G|480
11IQ|1|18|C|481
11IQ|1|18|G|482
11IQ|1|18|C|483
11IQ|1|18|A|484
11IQ|1|18|A|485
11IQ|1|18|A|486
11IQ|1|18|U|487
*
11IQ|1|18|A|512
11IQ|1|18|G|513
11IQ|1|18|U|514

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain S9

40S ribosomal protein S9

Chain v

Elongation factor 2