J3_11IQ_004
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 11IQ|1|18|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11IQ_004 not in the Motif Atlas
- Homologous match to J3_9PN5_031
- Geometric discrepancy: 0.1068
- The information below is about J3_9PN5_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.7
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
11IQ|1|18|U|682
11IQ|1|18|G|683
11IQ|1|18|G|684
*
11IQ|1|18|U|918
11IQ|1|18|A|919
11IQ|1|18|A|920
11IQ|1|18|G|921
11IQ|1|18|A|922
11IQ|1|18|G|923
*
11IQ|1|18|C|1019
11IQ|1|18|A|1020
11IQ|1|18|U|1021
11IQ|1|18|U|1022
11IQ|1|18|A|1023
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS17
- Chain FF
- 40S ribosomal protein S13
- Chain QQ
- 40S ribosomal protein S15a
- Chain RR
- 40S ribosomal protein S23
- Chain S7
- Small ribosomal subunit protein eS7
- Chain VV
- 40S ribosomal protein S27
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