J3_11IQ_006

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

11IQ|1|18|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11IQ_006 not in the Motif Atlas

Homologous match to J3_9H3G_033

Geometric discrepancy: 0.0891

The information below is about J3_9H3G_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23895.2

Basepair signature

cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

11IQ|1|18|A|938
11IQ|1|18|U|939
11IQ|1|18|U|940
11IQ|1|18|C|941
*
11IQ|1|18|G|985
11IQ|1|18|G|986
11IQ|1|18|A|987
11IQ|1|18|C|988
11IQ|1|18|C|989
11IQ|1|18|A|990
11IQ|1|18|G|991
11IQ|1|18|A|992
11IQ|1|18|G|993
*
11IQ|1|18|C|1000
11IQ|1|18|A|1001
11IQ|1|18|U|1002
11IQ|1|18|U|1003
11IQ|1|18|U|1004

Current chains

Chain 18

18S rRNA

Nearby chains

Chain 30

Large ribosomal subunit protein eL30

Chain AS

40S ribosomal protein S3a

Chain FF

40S ribosomal protein S13

Chain GG

Small ribosomal subunit protein uS11

Chain UU

eS26

Chain ff

60S ribosomal protein L37a