J3_11IQ_007
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CUG*UUCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 11IQ|1|18|C|1138, 11IQ|1|18|A|1150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11IQ_007 not in the Motif Atlas
- Homologous match to J3_9H3G_034
- Geometric discrepancy: 0.2558
- The information below is about J3_9H3G_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11IQ|1|18|C|1094
11IQ|1|18|U|1095
11IQ|1|18|G|1096
*
11IQ|1|18|U|1136
11IQ|1|18|U|1137
11IQ|1|18|C|1138
11IQ|1|18|C|1139
11IQ|1|18|G|1140
*
11IQ|1|18|C|1147
11IQ|1|18|A|1148
11IQ|1|18|A|1149
11IQ|1|18|A|1150
11IQ|1|18|G|1151
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain BB
- 40S_SA_C domain-containing protein
- Chain PP
- eS21
- Chain QQ
- 40S ribosomal protein S15a
- Chain UU
- eS26
- Chain VV
- 40S ribosomal protein S27
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