J3_11IQ_027

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

11IQ|1|28|U|2788, 11IQ|1|28|A|2789, 11IQ|1|28|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11IQ_027 not in the Motif Atlas

Homologous match to J3_9AXU_014

Geometric discrepancy: 0.1426

The information below is about J3_9AXU_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.3

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW

Number of instances in this motif group

6

Unit IDs

11IQ|1|28|G|2402
11IQ|1|28|A|2403
11IQ|1|28|A|2404
11IQ|1|28|G|2405
*
11IQ|1|28|C|2785
11IQ|1|28|C|2786
11IQ|1|28|A|2787
11IQ|1|28|U|2788
11IQ|1|28|A|2789
11IQ|1|28|U|2790
11IQ|1|28|C|2791
*
11IQ|1|28|G|2800
11IQ|1|28|U|2801
11IQ|1|28|C|2802

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 34

60S ribosomal protein L34

Chain 37

60S ribosomal protein L37

Chain 39

60S ribosomal protein L39