J3_11JJ_005
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 11JJ|1|18|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_005 not in the Motif Atlas
- Homologous match to J3_9PN5_033
- Geometric discrepancy: 0.119
- The information below is about J3_9PN5_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11JJ|1|18|A|938
11JJ|1|18|U|939
11JJ|1|18|U|940
11JJ|1|18|C|941
*
11JJ|1|18|G|985
11JJ|1|18|G|986
11JJ|1|18|A|987
11JJ|1|18|C|988
11JJ|1|18|C|989
11JJ|1|18|A|990
11JJ|1|18|G|991
11JJ|1|18|A|992
11JJ|1|18|G|993
*
11JJ|1|18|C|1000
11JJ|1|18|A|1001
11JJ|1|18|U|1002
11JJ|1|18|U|1003
11JJ|1|18|U|1004
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain AS
- 40S ribosomal protein S3a
- Chain FF
- 40S ribosomal protein S13
- Chain GG
- Small ribosomal subunit protein uS11
- Chain UU
- eS26
- Chain ff
- 60S ribosomal protein L37a
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