J3_11JJ_007
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_007 not in the Motif Atlas
- Homologous match to J3_9PN5_035
- Geometric discrepancy: 0.1471
- The information below is about J3_9PN5_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.3
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
11JJ|1|18|C|1218
11JJ|1|18|C|1219
11JJ|1|18|A|1220
11JJ|1|18|G|1221
*
11JJ|1|18|C|1645
11JJ|1|18|C|1646
11JJ|1|18|A|1647
11JJ|1|18|G|1648
11JJ|1|18|U|1649
11JJ|1|18|A|1650
11JJ|1|18|A|1651
*
11JJ|1|18|U|1673
11JJ|1|18|G|1674
11JJ|1|18|A|1675
11JJ|1|18|U|1676
11JJ|1|18|U|1677
11JJ|1|18|A|1678
11JJ|1|18|A|1679
11JJ|1|18|G|1680
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain II
- Small ribosomal subunit protein uS9
- Chain S5
- Small ribosomal subunit protein uS7
- Chain WW
- 40S ribosomal protein S28
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