J3_11JJ_015
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 11JJ|1|28|C|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_015 not in the Motif Atlas
- Homologous match to J3_8GLP_001
- Geometric discrepancy: 0.08
- The information below is about J3_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11JJ|1|28|C|112
11JJ|1|28|A|113
11JJ|1|28|G|114
11JJ|1|28|C|115
11JJ|1|28|G|116
*
11JJ|1|28|C|155
11JJ|1|28|G|156
11JJ|1|28|U|157
11JJ|1|28|A|158
11JJ|1|28|C|159
11JJ|1|28|G|160
*
11JJ|1|28|C|275
11JJ|1|28|C|276
11JJ|1|28|G|277
11JJ|1|28|G|278
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 35
- 60S ribosomal protein L35
- Chain 36
- 60S ribosomal protein L36
- Chain aa
- Large ribosomal subunit protein eL8
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