J3_11JJ_024

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

11JJ|1|28|A|2396, 11JJ|1|28|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11JJ_024 not in the Motif Atlas

Homologous match to J3_9AXU_013

Geometric discrepancy: 0.0832

The information below is about J3_9AXU_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.3

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

5

Unit IDs

11JJ|1|28|C|2393
11JJ|1|28|G|2394
11JJ|1|28|A|2395
11JJ|1|28|A|2396
11JJ|1|28|G|2397
11JJ|1|28|U|2398
11JJ|1|28|G|2399
*
11JJ|1|28|C|2805
11JJ|1|28|A|2806
11JJ|1|28|A|2807
*
11JJ|1|28|U|2819
11JJ|1|28|C|2820
11JJ|1|28|U|2821
11JJ|1|28|G|2822

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain 34

60S ribosomal protein L34