J3_11JJ_031

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

11JJ|1|28|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11JJ_031 not in the Motif Atlas

Homologous match to J3_8GLP_007

Geometric discrepancy: 0.1091

The information below is about J3_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

11JJ|1|28|C|3937
11JJ|1|28|G|3938
11JJ|1|28|G|3939
*
11JJ|1|28|C|4074
11JJ|1|28|U|4075
11JJ|1|28|G|4076
11JJ|1|28|A|4077
11JJ|1|28|C|4078
*
11JJ|1|28|G|4168
11JJ|1|28|G|4169
11JJ|1|28|A|4170
11JJ|1|28|C|4171
11JJ|1|28|A|4172
11JJ|1|28|G|4173

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain L8

60S ribosomal protein L8

Chain aa

Large ribosomal subunit protein eL8