J3_12DP_017

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

12DP|1|1A|A|2518, 12DP|1|1A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_017 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.084

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

12DP|1|1A|C|2517
12DP|1|1A|A|2518
12DP|1|1A|U|2519
12DP|1|1A|C|2520
*
12DP|1|1A|G|2545
12DP|1|1A|U|2546
12DP|1|1A|U|2547
*
12DP|1|1A|A|2561
12DP|1|1A|U|2562
12DP|1|1A|U|2563
12DP|1|1A|A|2564
12DP|1|1A|A|2565
12DP|1|1A|A|2566
12DP|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14