J3_12DP_067

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUCAG*CGCAACC*GACGACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_067 not in the Motif Atlas

Homologous match to J3_8B0X_010

Geometric discrepancy: 0.1346

The information below is about J3_8B0X_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01343.1

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

12DP|1|2a|C|1063
12DP|1|2a|G|1064
12DP|1|2a|U|1065
12DP|1|2a|C|1066
12DP|1|2a|A|1067
12DP|1|2a|G|1068
*
12DP|1|2a|C|1107
12DP|1|2a|G|1108
12DP|1|2a|C|1109
12DP|1|2a|A|1110
12DP|1|2a|A|1111
12DP|1|2a|C|1112
12DP|1|2a|C|1113
*
12DP|1|2a|G|1187
12DP|1|2a|A|1188
12DP|1|2a|C|1189
12DP|1|2a|G|1190
12DP|1|2a|A|1191
12DP|1|2a|C|1192
12DP|1|2a|G|1193

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2e

30S ribosomal protein S5

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z