3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8B0X_010 not in the Motif Atlas
Homologous match to J3_5J7L_008
Geometric discrepancy: 0.0991
The information below is about J3_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8B0X|1|A|C|1063
8B0X|1|A|G|1064
8B0X|1|A|U|1065
8B0X|1|A|C|1066
8B0X|1|A|A|1067
8B0X|1|A|G|1068
*
8B0X|1|A|C|1107
8B0X|1|A|G|1108
8B0X|1|A|C|1109
8B0X|1|A|A|1110
8B0X|1|A|A|1111
8B0X|1|A|C|1112
8B0X|1|A|C|1113
*
8B0X|1|A|G|1187
8B0X|1|A|A|1188
8B0X|1|A|U|1189
8B0X|1|A|G|1190
8B0X|1|A|A|1191
8B0X|1|A|C|1192
8B0X|1|A|G|1193

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
30S ribosomal protein S3
Chain E
30S ribosomal protein S5
Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain J
30S ribosomal protein S10
Chain N
30S ribosomal protein S14

Coloring options:


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