J3_12DP_070

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

12DP|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_070 not in the Motif Atlas

Homologous match to J3_8B0X_031

Geometric discrepancy: 0.1265

The information below is about J3_8B0X_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

12DP|1|2a|C|1116
12DP|1|2a|G|1117
12DP|1|2a|C|1118
*
12DP|1|2a|G|1155
12DP|1|2a|G|1156
12DP|1|2a|A|1157
12DP|1|2a|C|1158
12DP|1|2a|U|1159
12DP|1|2a|G|1160
12DP|1|2a|C|1161
*
12DP|1|2a|G|1175
12DP|1|2a|A|1176
12DP|1|2a|G|1177
12DP|1|2a|G|1178
12DP|1|2a|A|1179
12DP|1|2a|A|1180
12DP|1|2a|G|1181
12DP|1|2a|G|1182
12DP|1|2a|A|1183
12DP|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z