J3_12DQ_035
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 12DQ|1|1a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_12DQ_035 not in the Motif Atlas
- Homologous match to J3_8B0X_031
- Geometric discrepancy: 0.1025
- The information below is about J3_8B0X_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
12DQ|1|1a|C|1116
12DQ|1|1a|G|1117
12DQ|1|1a|C|1118
*
12DQ|1|1a|G|1155
12DQ|1|1a|G|1156
12DQ|1|1a|A|1157
12DQ|1|1a|C|1158
12DQ|1|1a|U|1159
12DQ|1|1a|G|1160
12DQ|1|1a|C|1161
*
12DQ|1|1a|G|1175
12DQ|1|1a|A|1176
12DQ|1|1a|G|1177
12DQ|1|1a|G|1178
12DQ|1|1a|A|1179
12DQ|1|1a|A|1180
12DQ|1|1a|G|1181
12DQ|1|1a|G|1182
12DQ|1|1a|A|1183
12DQ|1|1a|G|1184
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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