J3_12DQ_047

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

12DQ|1|2A|A|1609, 12DQ|1|2A|A|1610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_047 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1043

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

12DQ|1|2A|C|1306
12DQ|1|2A|A|1307
12DQ|1|2A|A|1308
12DQ|1|2A|G|1309
*
12DQ|1|2A|C|1605
12DQ|1|2A|G|1606
12DQ|1|2A|C|1607
12DQ|1|2A|A|1608
12DQ|1|2A|A|1609
12DQ|1|2A|A|1610
12DQ|1|2A|C|1611
*
12DQ|1|2A|G|1620
12DQ|1|2A|U|1621
12DQ|1|2A|G|1622

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34