J3_12DQ_050
3D structure
- PDB id
- 12DQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 12DQ|1|2A|A|2198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_12DQ_050 not in the Motif Atlas
- Homologous match to J3_8B0X_021
- Geometric discrepancy: 0.1288
- The information below is about J3_8B0X_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
12DQ|1|2A|U|2091
12DQ|1|2A|U|2092
12DQ|1|2A|G|2093
*
12DQ|1|2A|C|2196
12DQ|1|2A|U|2197
12DQ|1|2A|A|2198
12DQ|1|2A|A|2199
12DQ|1|2A|C|2200
*
12DQ|1|2A|G|2223
12DQ|1|2A|G|2224
12DQ|1|2A|A|2225
12DQ|1|2A|C|2226
12DQ|1|2A|A|2227
12DQ|1|2A|G|2228
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L28
- Chain 2D
- 50S ribosomal protein L2
- Chain 2I
- 50S ribosomal protein L9
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