J3_8B0X_021

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B0X_021 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0441

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8B0X|1|a|C|2095
8B0X|1|a|U|2096
8B0X|1|a|G|2097
*
8B0X|1|a|C|2200
8B0X|1|a|U|2201
8B0X|1|a|A|2202
8B0X|1|a|A|2203
8B0X|1|a|C|2204
*
8B0X|1|a|G|2227
8B0X|1|a|G|2228
8B0X|1|a|A|2229
8B0X|1|a|C|2230
8B0X|1|a|A|2231
8B0X|1|a|G|2232

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28