J3_12DQ_054

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

12DQ|1|2A|G|2833, 12DQ|1|2A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_054 not in the Motif Atlas

Homologous match to J3_7A0S_013

Geometric discrepancy: 0.2814

The information below is about J3_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

12DQ|1|2A|C|2814
12DQ|1|2A|C|2815
*
12DQ|1|2A|G|2831
12DQ|1|2A|U|2832
12DQ|1|2A|G|2833
12DQ|1|2A|G|2834
12DQ|1|2A|A|2835
12DQ|1|2A|U|2836
*
12DQ|1|2A|A|2882
12DQ|1|2A|A|2883
12DQ|1|2A|U|2884
12DQ|1|2A|C|2885
12DQ|1|2A|G|2886

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17