J3_12DQ_066

3D structure

PDB id

12DQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus 70S ribosome in complex with sparsomycin, protein Y, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

12DQ|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DQ_066 not in the Motif Atlas

Homologous match to J3_8B0X_029

Geometric discrepancy: 0.1744

The information below is about J3_8B0X_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

12DQ|1|2a|C|990
12DQ|1|2a|U|991
12DQ|1|2a|U|992
12DQ|1|2a|G|993
12DQ|1|2a|A|994
12DQ|1|2a|C|995
12DQ|1|2a|A|996
12DQ|1|2a|U|997
*
12DQ|1|2a|A|1044
12DQ|1|2a|C|1045
12DQ|1|2a|A|1046
12DQ|1|2a|G|1047
*
12DQ|1|2a|C|1210
12DQ|1|2a|U|1211
12DQ|1|2a|U|1212
12DQ|1|2a|A|1213
12DQ|1|2a|C|1214
12DQ|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z