Motif J3_28881.1 Version J3_28881.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 3-9 | 4-10 | 6-11 | 7-10 | 8-9 | 11-14 | 11-15 | 12-13 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_016 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 990 | U | 991 | U | 992 | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | A | 1046 | G | 1047 | * | C | 1210 | U | 1211 | A | 1213 | G | 1215 | cWW | tWH | cWW | cWS | cWS | cWW | ntHS | ntWW | cWW | |
| 2 | J3_8B0X_029 | 8B0X | 0.1569 | 2 | A | SSU rRNA | C | 990 | U | 991 | U | 992 | G | 993 | A | 994 | C | 995 | A | 996 | U | 997 | * | A | 1044 | C | 1045 | A | 1046 | G | 1047 | * | C | 1210 | U | 1211 | A | 1213 | G | 1215 | cWW | tWH | tWH | cWW | ncWS | cWW | ntWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGACAU*ACAG*CUUACG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGACA*CA*UUAC | 2 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW
- Heat map statistics
- Min 0.16 | Avg 0.08 | Max 0.16
Coloring options: