J3_1C04_001

3D structure

PDB id

1C04 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1C04_001 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1165

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

1C04|1|E|G|5
1C04|1|E|G|6
1C04|1|E|A|7
*
1C04|1|E|U|31
1C04|1|E|U|32
1C04|1|E|U|33
1C04|1|E|A|34
1C04|1|E|A|35
1C04|1|E|A|36
1C04|1|E|G|37
*
1C04|1|E|C|52
1C04|1|E|A|53
1C04|1|E|C|54

Current chains

Chain E

23S RRNA FRAGMENT

Nearby chains

Chain C

RIBOSOMAL PROTEIN L11