J3_1FFK_008

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

1FFK|1|0|A|2553, 1FFK|1|0|U|2554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFK_008 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0223

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1FFK|1|0|C|2552
1FFK|1|0|A|2553
1FFK|1|0|U|2554
1FFK|1|0|C|2555
*
1FFK|1|0|G|2580
1FFK|1|0|U|2581
1FFK|1|0|G|2582
1FFK|1|0|A|2583
*
1FFK|1|0|U|2595
1FFK|1|0|A|2596
1FFK|1|0|U|2597
1FFK|1|0|U|2598
1FFK|1|0|A|2599
1FFK|1|0|A|2600
1FFK|1|0|A|2601
1FFK|1|0|G|2602

Current chains

Chain 0

23S RRNA

Nearby chains

Chain B

RIBOSOMAL PROTEIN L3

Chain H

RIBOSOMAL PROTEIN L14