J3_1FFK_015

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFK_015 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0448

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

1FFK|1|0|C|1450
1FFK|1|0|C|1451
1FFK|1|0|G|1452
1FFK|1|0|G|1453
1FFK|1|0|U|1454
1FFK|1|0|C|1455
*
1FFK|1|0|G|1490
1FFK|1|0|G|1491
1FFK|1|0|A|1492
1FFK|1|0|A|1493
1FFK|1|0|A|1494
*
1FFK|1|0|U|1511
1FFK|1|0|G|1512

Current chains

Chain 0

23S RRNA

Nearby chains

Chain Y

RIBOSOMAL PROTEIN L39E