Motif J3_94309.2 Version J3_94309.2 of this group appears in releases 4.7 to 4.7

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6	break		7		8		9		10		11	break		12		13	1-13	5-8	6-7	11-12
1	J3_8GLP_030	8GLP	0.1469	0	L5	LSU rRNA	U	2440	C	2441	G	2442	G	2443	U	2444	C	2445	*	G	2515	G	2516	A	2517	G	2518	U	2519	*	A	2536	A	2537	cWW	ntHS	cWW	cWW
2	J3_4V9F_016	4V9F	0.0989	0	0	LSU rRNA	C	1450	C	1451	G	1452	G	1453	U	1454	C	1455	*	G	1490	G	1491	A	1492	A	1493	A	1494	*	U	1511	G	1512	cWW	ntHS	cWW	cWW
3	J3_8OI5_014	8OI5	0.0000	0	1	LSU rRNA	U	1522	C	1523	G	1524	A	1525	U	1526	C	1527	*	G	1587	G	1588	A	1589	A	1590	U	1591	*	A	1608	A	1609	cWW	ntHS	cWW	cWW
4	J3_8P9A_055	8P9A	0.0729	0	AR	LSU rRNA	U	1526	C	1527	G	1528	A	1529	U	1530	C	1531	*	G	1591	G	1592	A	1593	A	1594	U	1595	*	A	1612	A	1613	cWW	ntHS	cWW	cWW
5	J3_9AXU_015	9AXU	0.0746	0	2	LSU rRNA	U	1560	C	1561	G	1562	A	1563	U	1564	C	1565	*	G	1626	G	1627	A	1628	A	1629	U	1630	*	A	1647	A	1648	cWW	ntHS	cWW	cWW
6	J3_9H3G_017	9H3G	0.0953	0	A	LSU rRNA	U	1535	C	1536	G	1537	A	1538	U	1539	C	1540	*	G	1592	G	1593	G	1594	A	1595	U	1596	*	A	1613	A	1614	cWW	ntHS	cWW	cWW
7	J3_9E6Q_011	9E6Q	0.1034	0	1	LSU rRNA	C	1473	C	1474	G	1475	G	1476	U	1477	C	1478	*	G	1512	G	1513	A	1514	A	1515	A	1516	*	U	1533	G	1534	cWW	ntHS	cWW	cWW
8	J3_9DFE_012	9DFE	0.4929	1	1A	LSU rRNA	G	1344	C	1345	G	1346	G	1347	G	1348	C	1350	*	G	1381	G	1382	C	1383	A	1384	G	1385	*	C	1402	C	1403	cWW		cWW	cWW
9	J3_7A0S_018	7A0S	0.5129	1	X	LSU rRNA	U	1357	C	1358	G	1359	G	1360	G	1361	C	1363	*	G	1394	A	1395	C	1396	A	1397	G	1398	*	C	1415	A	1416	cWW		cWW	cWW
10	J3_4WF9_016	4WF9	0.5577	1	X	LSU rRNA	U	1381	C	1382	G	1383	G	1384	G	1385	C	1387	*	G	1418	A	1419	U	1420	A	1421	A	1422	*	U	1439	A	1440	cWW		cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCGAUCGGAAUAA	3
CCGGUCGGAAAUG	2
UCGGUCGGAGUAA	1
UCGAUCGGGAUAA	1
GCGGGACGGCAGCC	1
UCGGGACGACAGCA	1
UCGGGUCGAUAAUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CGAUGAA	3
CGGUGAA	2
CGGUGAG	1
CGAUGGA	1
CGGGAGCA	1
CGGGAACA	1
CGGGUAUA	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (10)
Basepair signature: cWW-F-cWW-F-F-F-F-F-cWW-F
Heat map statistics: Min 0.07 | Avg 0.28 | Max 0.58

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Coloring options: Nucleotide numbers

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