J3_1FFK_017

3D structure

PDB id

1FFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

1FFK|1|0|A|2425, 1FFK|1|0|A|2463

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFK_017 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.0395

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

1FFK|1|0|G|2316
1FFK|1|0|C|2317
1FFK|1|0|C|2318
*
1FFK|1|0|G|2421
1FFK|1|0|U|2422
1FFK|1|0|C|2423
1FFK|1|0|U|2424
1FFK|1|0|A|2425
1FFK|1|0|G|2426
1FFK|1|0|C|2427
1FFK|1|0|G|2428
1FFK|1|0|A|2429
1FFK|1|0|A|2430
1FFK|1|0|C|2431
1FFK|1|0|C|2432
*
1FFK|1|0|G|2459
1FFK|1|0|A|2460
1FFK|1|0|U|2461
1FFK|1|0|G|2462
1FFK|1|0|A|2463
1FFK|1|0|C|2464

Current chains

Chain 0

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L15

Chain N

RIBOSOMAL PROTEIN L21E

Chain Z

RIBOSOMAL PROTEIN L44E