J3_1FFZ_003

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

1FFZ|1|A|A|2553, 1FFZ|1|A|U|2554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFZ_003 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0612

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1FFZ|1|A|C|2552
1FFZ|1|A|A|2553
1FFZ|1|A|U|2554
1FFZ|1|A|C|2555
*
1FFZ|1|A|G|2580
1FFZ|1|A|U|2581
1FFZ|1|A|G|2582
1FFZ|1|A|A|2583
*
1FFZ|1|A|U|2595
1FFZ|1|A|A|2596
1FFZ|1|A|U|2597
1FFZ|1|A|U|2598
1FFZ|1|A|A|2599
1FFZ|1|A|A|2600
1FFZ|1|A|A|2601
1FFZ|1|A|G|2602

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains