J3_1FFZ_005

3D structure

PDB id

1FFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

1FFZ|1|A|A|2425, 1FFZ|1|A|A|2463

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FFZ_005 not in the Motif Atlas

Homologous match to J3_4V9F_018

Geometric discrepancy: 0.0609

The information below is about J3_4V9F_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44792.1

Basepair signature

cWW-F-tHH-cWW-tHW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

1FFZ|1|A|G|2316
1FFZ|1|A|C|2317
1FFZ|1|A|C|2318
*
1FFZ|1|A|G|2421
1FFZ|1|A|U|2422
1FFZ|1|A|C|2423
1FFZ|1|A|U|2424
1FFZ|1|A|A|2425
1FFZ|1|A|G|2426
1FFZ|1|A|C|2427
1FFZ|1|A|G|2428
1FFZ|1|A|A|2429
1FFZ|1|A|A|2430
1FFZ|1|A|C|2431
1FFZ|1|A|C|2432
*
1FFZ|1|A|G|2459
1FFZ|1|A|A|2460
1FFZ|1|A|U|2461
1FFZ|1|A|G|2462
1FFZ|1|A|A|2463
1FFZ|1|A|C|2464

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains