J3_1FG0_003

3D structure

PDB id

1FG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH A 13 BP MINIHELIX-PUROMYCIN COMPOUND

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUC*GUGA*UAUUAAAG

Length

16 nucleotides

Bulged bases

1FG0|1|A|A|2553, 1FG0|1|A|U|2554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1FG0_003 not in the Motif Atlas

Homologous match to J3_4V9F_009

Geometric discrepancy: 0.0319

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69441.1

Basepair signature

cWW-cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

1

Unit IDs

1FG0|1|A|C|2552
1FG0|1|A|A|2553
1FG0|1|A|U|2554
1FG0|1|A|C|2555
*
1FG0|1|A|G|2580
1FG0|1|A|U|2581
1FG0|1|A|G|2582
1FG0|1|A|A|2583
*
1FG0|1|A|U|2595
1FG0|1|A|A|2596
1FG0|1|A|U|2597
1FG0|1|A|U|2598
1FG0|1|A|A|2599
1FG0|1|A|A|2600
1FG0|1|A|A|2601
1FG0|1|A|G|2602

Current chains

Chain A

23S RIBOSOMAL RNA

Nearby chains