J3_1GID_002

3D structure

PDB id

1GID (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAG*UGGC*GGUAUG

Length

14 nucleotides

Bulged bases

1GID|1|B|U|179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23680.1

Basepair signature

cWW-F-tHS-F-tHS-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1GID|1|B|C|138
1GID|1|B|A|139
1GID|1|B|A|140
1GID|1|B|G|141
*
1GID|1|B|U|162
1GID|1|B|G|163
1GID|1|B|G|164
1GID|1|B|C|165
*
1GID|1|B|G|175
1GID|1|B|G|176
1GID|1|B|U|177
1GID|1|B|A|178
1GID|1|B|U|179
1GID|1|B|G|180

Current chains

Chain B

P4-P6 RNA RIBOZYME DOMAIN

Nearby chains

Chain A

P4-P6 RNA RIBOZYME DOMAIN