Motif J3_23680.1 Version J3_23680.1 of this group appears in releases 3.84 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 1-13 | 5-6 | 7-12 | 8-11 | 9-10 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_1GID_002 | 1GID | 0.0000 | 1 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 175 | G | 176 | U | 177 | A | 178 | G | 180 | * | C | 138 | A | 139 | A | 140 | G | 141 | * | U | 162 | G | 163 | G | 164 | C | 165 | cWW | cWW | tHS | tHS | cWW |
2 | J3_2R8S_001 | 2R8S | 0.1942 | 1 | R | P4-P6 RNA RIBOZYME DOMAIN | G | 175 | G | 176 | U | 177 | A | 178 | G | 180 | * | C | 138 | A | 139 | A | 140 | G | 141 | * | U | 162 | G | 163 | G | 164 | C | 165 | cWW | cWW | tHS | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAAG*UGGC*GGUAUG | 2 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AA*GG*GUAU | 2 |
- Annotations
-
- (2)
- Basepair signature
- cWW-F-tHS-F-tHS-F-cWW-cWW
- Heat map statistics
- Min 0.19 | Avg 0.10 | Max 0.19
Coloring options: