J3_1HC8_002

3D structure

PDB id

1HC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1HC8_002 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.0903

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

1HC8|1|D|G|305
1HC8|1|D|G|306
1HC8|1|D|A|307
*
1HC8|1|D|U|331
1HC8|1|D|U|332
1HC8|1|D|U|333
1HC8|1|D|A|334
1HC8|1|D|A|335
1HC8|1|D|A|336
1HC8|1|D|G|337
*
1HC8|1|D|C|352
1HC8|1|D|A|353
1HC8|1|D|C|354

Current chains

Chain D

58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN

Nearby chains

Chain A

RIBOSOMAL PROTEIN L11

Chain B

RIBOSOMAL PROTEIN L11

Chain C

Large subunit ribosomal RNA; LSU rRNA