J3_1HNZ_015

3D structure

PDB id

1HNZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

1HNZ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1HNZ_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1396

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1HNZ|1|A|C|990
1HNZ|1|A|U|991
1HNZ|1|A|U|992
1HNZ|1|A|G|993
1HNZ|1|A|A|994
1HNZ|1|A|C|995
1HNZ|1|A|A|996
1HNZ|1|A|U|997
*
1HNZ|1|A|A|1044
1HNZ|1|A|C|1045
1HNZ|1|A|A|1046
1HNZ|1|A|G|1047
*
1HNZ|1|A|C|1210
1HNZ|1|A|U|1211
1HNZ|1|A|U|1212
1HNZ|1|A|A|1213
1HNZ|1|A|C|1214
1HNZ|1|A|G|1215

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14