3D structure

PDB id
1IBK (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.31 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
1IBK|1|A|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1IBK_001 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.0586
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

1IBK|1|A|C|826
1IBK|1|A|U|827
1IBK|1|A|A|828
1IBK|1|A|G|829
*
1IBK|1|A|C|857
1IBK|1|A|G|858
1IBK|1|A|A|859
1IBK|1|A|A|860
1IBK|1|A|G|861
*
1IBK|1|A|C|868
1IBK|1|A|G|869
1IBK|1|A|U|870
1IBK|1|A|U|871
1IBK|1|A|A|872
1IBK|1|A|A|873
1IBK|1|A|G|874

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain B
30S RIBOSOMAL PROTEIN S2
Chain H
30S RIBOSOMAL PROTEIN S8

Coloring options:


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