3D structure

PDB id
1IBK (explore in PDB, NAKB, or RNA 3D Hub)
Description
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.31 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
1IBK|1|A|U|1240, 1IBK|1|A|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1IBK_008 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.0765
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

1IBK|1|A|C|1237
1IBK|1|A|A|1238
1IBK|1|A|A|1239
1IBK|1|A|U|1240
1IBK|1|A|G|1241
*
1IBK|1|A|C|1296
1IBK|1|A|C|1297
1IBK|1|A|C|1298
1IBK|1|A|A|1299
1IBK|1|A|G|1300
1IBK|1|A|U|1301
1IBK|1|A|U|1302
1IBK|1|A|C|1303
*
1IBK|1|A|G|1334
1IBK|1|A|C|1335
1IBK|1|A|C|1336
1IBK|1|A|G|1337

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain G
30S RIBOSOMAL PROTEIN S7
Chain M
30S RIBOSOMAL PROTEIN S13
Chain V
30S RIBOSOMAL PROTEIN THX

Coloring options:


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