J3_1IBL_014
3D structure
- PDB id
- 1IBL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.11 Å
Loop
- Sequence
- UG*CGCCGAUGG*CAG
- Length
- 14 nucleotides
- Bulged bases
- 1IBL|1|A|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1IBL_014 not in the Motif Atlas
- Homologous match to J3_4LFB_012
- Geometric discrepancy: 0.1005
- The information below is about J3_4LFB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
1IBL|1|A|U|672
1IBL|1|A|G|673
*
1IBL|1|A|C|717
1IBL|1|A|G|718
1IBL|1|A|C|719
1IBL|1|A|C|720
1IBL|1|A|G|721
1IBL|1|A|A|722
1IBL|1|A|U|723
1IBL|1|A|G|724
1IBL|1|A|G|725
*
1IBL|1|A|C|732
1IBL|1|A|A|733
1IBL|1|A|G|734
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain F
- 30S RIBOSOMAL PROTEIN S6
- Chain K
- 30S RIBOSOMAL PROTEIN S11
- Chain O
- 30S RIBOSOMAL PROTEIN S15
- Chain R
- 30S RIBOSOMAL PROTEIN S18
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