J3_1IBL_015

3D structure

PDB id

1IBL (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

1IBL|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1IBL_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1529

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

1IBL|1|A|C|990
1IBL|1|A|U|991
1IBL|1|A|U|992
1IBL|1|A|G|993
1IBL|1|A|A|994
1IBL|1|A|C|995
1IBL|1|A|A|996
1IBL|1|A|U|997
*
1IBL|1|A|A|1044
1IBL|1|A|C|1045
1IBL|1|A|A|1046
1IBL|1|A|G|1047
*
1IBL|1|A|C|1210
1IBL|1|A|U|1211
1IBL|1|A|U|1212
1IBL|1|A|A|1213
1IBL|1|A|C|1214
1IBL|1|A|G|1215

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14