J3_1IBM_001
3D structure
- PDB id
- 1IBM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.31 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 1IBM|1|A|U|871, 1IBM|1|A|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1IBM_001 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0609
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
1IBM|1|A|C|826
1IBM|1|A|U|827
1IBM|1|A|A|828
1IBM|1|A|G|829
*
1IBM|1|A|C|857
1IBM|1|A|G|858
1IBM|1|A|A|859
1IBM|1|A|A|860
1IBM|1|A|G|861
*
1IBM|1|A|C|868
1IBM|1|A|G|869
1IBM|1|A|U|870
1IBM|1|A|U|871
1IBM|1|A|A|872
1IBM|1|A|A|873
1IBM|1|A|G|874
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain B
- 30S RIBOSOMAL PROTEIN S2
- Chain E
- 30S RIBOSOMAL PROTEIN S5
- Chain H
- 30S RIBOSOMAL PROTEIN S8
Coloring options: